BioModels-QC

Command-line application for quality controlling entries in the BioModels database and converting the primary files for entries in the database into additional formats such as BioPAX, MATLAB/Octave, and XPP.

The application can be installed locally or executed as a Docker image.

This application is intended to be used in conjuction with the best practices recommended here.

Contents

• 1. Installation
  • 1.1. Local installation
  • 1.2. Docker image
• 2. Tutorial
  • 2.1. Convert the files for an entry to additional formats
  • 2.2. Validate an entry
  • 2.3. Using the Docker image
• 3. Documentation
  • 3.1. Local installation
  • 3.2. Using the Docker image
• 4. API documentation
  • 4.1. Submodules
  • 4.2. biomodels_qc.convert module
  • 4.3. biomodels_qc.utils module
  • 4.4. biomodels_qc.validation module
  • 4.5. biomodels_qc.warnings module
• 5. About BioModels-QC
  • 5.1. License
  • 5.2. Development team
  • 5.3. Contributing to BioModels-QC
  • 5.4. Acknowledgements
  • 5.5. Questions and comments
• 6. Index