1. Installation

1.1. Local installation

First, install the following requirements:

• Python 3.9.0+

• pip >= 19.3

• Systems Biology Format Converter

  • Java

• Octave

  • Mac OS installer

  • Ubuntu: apt-get install octave

  • Windows installer

• Scilab

  • Mac OS installer

  • Ubuntu: apt-get install scilab

  • Windows installer

• SVGLint

  • Node.js

    • Mac OS installer

    • Ubuntu instructions

    • Windows installer

• XPP

  • Mac OS instructions

  • Ubuntu: apt-get install xppaut

  • Windows instructions

Second, add paths to the following to your system path:

• sbfConverter.sh (Linux/Mac OS) or sbfConverter.bat (Windows)

• svglint

• xppaut

Third, run the following command to install this package:

pip install biomodels-qc

1.2. Docker image

Run the following command to pull the Docker image:

docker pull ghcr.io/biosimulations/biomodels_qc